Tom Gjelten

The Muslim Brotherhood, the Islamist movement that has long held a disputed position in Middle Eastern politics, is now a focus of controversy in the United States.

Known in Arabic as the Ikhwan and founded nearly a century ago in Egypt, it advocates the application of Islamic principles in public life. The movement has so far pushed that agenda only in Muslim-majority countries, but some critics now claim — without evidence — that it is doing the same in the United States.

The collision of two core American values — freedom of religion and freedom from discrimination — is prompting a showdown in legislatures and courts across the country.

For some conservatives, religious freedom means the right to act on their opposition to same-sex marriage and other practices that go against their beliefs. LGBT advocates and their allies, meanwhile, say no one in the United States should face discrimination because of their sexual orientation.

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During his campaign, Donald Trump criticized President Obama for his reluctance to use the words "radical Islamic extremism."

One of Obama's key anti-terrorism programs was just called "Countering Violent Extremism," with no reference to Islam. The Trump administration may now want to refocus that program exclusively on Muslim extremists.

The Obama program made no reference to Islam largely because it didn't want to suggest that terrorism, even by Muslim extremists, had its roots in religion.

In his address to the National Prayer Breakfast on Thursday, President Trump vowed to "get rid of and totally destroy the Johnson Amendment and allow our representatives of faith to speak freely and without fear of retribution."

Some conservative Christian groups will welcome the promise, but many Americans may wonder what Trump was talking about. Here are five basic questions that we can answer.

1. What is the Johnson Amendment?

The Johnson Amendment regulates what tax-exempt organizations such as churches can do in the political arena.

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The U.S. Constitution prohibits "an establishment of religion," but U.S. presidents have long paid tribute to the importance of faith in a divine power.

"Every free government is imbedded soundly in a deeply-felt religious faith, or it makes no sense," said Dwight D. Eisenhower, speaking at the first National Prayer Breakfast in 1953. Since then, all presidents have spoken at the annual event, often highlighting their own faith or the role of prayer in their personal lives.

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President Trump is promising to give priority to Christians fleeing persecution — yet some of the strongest criticism of his executive order is coming from Christian leaders themselves.

Some say the temporary ban on admitting refugees challenges the Christian ethic of welcoming the stranger. Others worry that favoring Christians over other immigrants could actually backfire.

President Trump's temporary ban on the admission of refugees is not going over well with the churches and religious organizations that handle most refugee resettlements in the United States.

"The faith groups are going to kick and scream and object to every aspect of this disgusting, vile executive order," says Mark Hetfield, president of HIAS, a Jewish refugee society. "[It] makes America out to be something that it is not. We are a country that welcomes refugees."

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President Trump faces the challenge of making good on many promises, including this from his inauguration speech.

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The Dar al-Hijrah mosque in Northern Virginia has seen its share of attention. Two of the hijackers in the Sept. 11 attacks prayed there, and jihadi propagandist Anwar al-Awlaki served as an imam at the mosque before heading off to Yemen to join al-Qaida.

Now, with a U.S. president-elect who has suggested he will take a hard line with Muslim-Americans, the worshipers at Dar al-Hijrah again are bracing for scrutiny and looking for reassurance.

The six faith leaders President-elect Donald Trump has invited to pray at his inauguration come from diverse backgrounds, but they have something in common: All have personal ties to Trump or his family or have in some way signaled their approval of him, his politics or his wealth.

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